PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 403aa    MW: 45581.9 Da    PI: 5.4112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5808.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.24.9e-34752141128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 
                lp+G++F+Ptd+e++++ L+++ +g++     +  +e+i++vd    i++++P++Lp  vk++ ++ +fF+++ k+y+tgkrk+r ++     + +W++t
  Dca5808.1  75 LPRGVKFDPTDQEIIQHLLAQSGKGNEiphpfI--SEFIPTVDeeegICYTHPSNLP-GVKQDGTSSHFFHRSIKAYNTGKRKRRRIHsddegDVRWHKT 171
                799*******************99999665432..334555544445**********.77888999*******************75545544778**** PP

        NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                g++k+v++ ++ ++g+kk++v+y  + +  k+ekt+Wvmh+y+l
  Dca5808.1 172 GRTKPVIV-NDVQKGCKKIMVLYvsTSKGGKAEKTNWVMHQYHL 214
                ********.999***********6655777888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3760233IPR003441NAC domain
PROSITE profilePS5100530.74175233IPR003441NAC domain
PfamPF023654.4E-1576214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKFFHVAYDF FSVRLLIRVL PVWLFDGNRF ATKIKCASAT SDSENVKWIS NPCRSCPSCH  60
HIIDNSDVIQ EWPGLPRGVK FDPTDQEIIQ HLLAQSGKGN EIPHPFISEF IPTVDEEEGI  120
CYTHPSNLPG VKQDGTSSHF FHRSIKAYNT GKRKRRRIHS DDEGDVRWHK TGRTKPVIVN  180
DVQKGCKKIM VLYVSTSKGG KAEKTNWVMH QYHLGVQEDE NEGEFVISKV FLQQQHVKQN  240
DNSGRNVPDT PDKLVVKLDP VTPKPVTPDH QQIEIQCNLI EEPLLPSLDS VTQDDGIEYA  300
DEMKLPEVSR SSDHDNDADE TAADQGLDHD NNQIGSEENI YLVDSHQLIA GLQLCADFFQ  360
SQSPTRDENS GDVARKRSVL SEYAQLGSEV LKKDLEECHN FVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-137521415140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156KRKRRR
2152156RKRRR
3153157KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695823.11e-159PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-129NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0K9RQ221e-164A0A0K9RQ22_SPIOL; Uncharacterized protein (Fragment)
STRINGPOPTR_0008s11550.11e-154(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-130NAC family protein